PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090931.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 496aa    MW: 52082.4 Da    PI: 7.769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-126186227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C yG+rC+F+H++
  XP_011090931.1 61 DEPDCIYYLRTGFCGYGNRCRFNHPR 86
                    6899********************96 PP

2zf-CCCH37.44.3e-12108132327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_011090931.1 108 QPVCQYYMRTGMCKFGASCKYHHPK 132
                     689********************96 PP

3zf-CCCH35.22.1e-11153178227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG+Ck+G +CkF+H++
  XP_011090931.1 153 GEKECSYYVKTGQCKFGVTCKFHHPQ 178
                     7899********************97 PP

4zf-CCCH37.44.4e-12318344127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G++Ck++H+p
  XP_011090931.1 318 PGQPECQYYLKTGDCKFGATCKYHHPP 344
                     5789*********************97 PP

5zf-CCCH36.77.3e-12366390327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +lC+++a++G Ck+G++CkF H++
  XP_011090931.1 366 APLCSHYAQNGVCKFGPSCKFDHPM 390
                     68*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5585987IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-55986IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-96186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-56586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507105133IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6108133IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4110132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389151179IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6153179IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9153178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4157177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826317345IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6317344IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5321344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4323344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309363391IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7363390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6366391IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9366390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5368388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MERYSGTQAM EAVQVDPVAE WAAPVDPVAE WAAPGGETGL EEPMWQLGLG GGPESYPERP  60
DEPDCIYYLR TGFCGYGNRC RFNHPRDRSM AMGALRAGGG EYPERAGQPV CQYYMRTGMC  120
KFGASCKYHH PKHGVGSSAP VTLNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFHHPQPA  180
GIQVPAPPGP GAGPLAAPAG YPSVQSPSGQ SSQQYGVIQG NWPVARPAML PGSYVPGSYG  240
PMLFPPGVVP VPGWTPYPAP VSPVASSSAQ PTVGPGPIYG LTQLSPSATA YTGPFLSVTS  300
SAGPSSSSQK EHPFPERPGQ PECQYYLKTG DCKFGATCKY HHPPEWSAPK INFVLSPMGL  360
PLRPGAPLCS HYAQNGVCKF GPSCKFDHPM RILSYSPSAS SLTDMPVAPY PVGSTNATLA  420
PSTSSSDLRP ELLSGYNKDA FSWQMSSMNS SSAAGGSLFS TSGAVPQSSA QQSGQGSISS  480
SGGSTISRGG EVHASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-166C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A022Q7680.0A0A022Q768_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein